PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 642684930 IMG__ChlphaBS1_FD:642684930 (434 amino acids)

SeqID: 642684930 IMG__ChlphaBS1_FD:642684930
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584840: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>642684930 IMG__ChlphaBS1_FD:642684930
MKDNSQSLDFDREHIWHPYTSMRDPLPVYPVKGASGVRIELEDGRRLIDGMSSWWAAIHG
YNHPVLNEAVRKQLEKMSHVMFGGFTHEPAVRLAEKLVDLTPGPLQKVFFSDSGSVSVEV
AIKMALQYHHAAGRPKKNRLLTIRSGYHGDTFAAMSVCDPVTGMHGLFSGVLPQQLFAEA
PACGFHDVWSDDSIGDFRRQVEMYHREIAAVILEPVVQGAGGMRFYSPEYLVRVRELCDR
YDLLLIFDEIATGFGRTGKMFALEHADVVPDILCIGKALTGGYMTLAATLTNGDVSGVIS
NAEPGVFMHGPTFMANPLACAVASASIDLLAESDWRNSVRVIEAQLASGLEPCRIVPGVA
DVRVLGAIGVVELEQPVDMVVIQKRFVEKGVWVRPFGRLVYLMPPYIISREELHVLTDAV
CEVIASIQHDKRSG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory