PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6935941 FitnessBrowser__SB2B:6935941 (1108 amino acids)

SeqID: 6935941 FitnessBrowser__SB2B:6935941
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6935941 FitnessBrowser__SB2B:6935941
MASLSPSFSPWRSRARLSPLALAVALVIAPIGFTANAAPVGKLDTLRQEGASVDIRTDSG
ALVQVSVLKPSLIRIQAGANGKLTAEGSKAAAIVIKDDYPAVAYTLSDEGDYRLLKTEAL
ALRIYEAPLRFALYQADNQTLITEELQSLELGESSTVQTLSTDVDERFFGGGQQNGAFEF
KGKSLEISYSGGWEEGDRPSPAPFYLSSKGYGVLRNTWANGSYDFRSSDALRLGHDEARF
DAFFFAPGSIQQVLADYTELTGRARLIPRWAFEYGDADCYNDGDNVKKPGTVPDGWSDGP
TGTTPDVIDSVAKKYREHDMPGGWILPNDGYGCGYTDLPKVVEGLAKYGFRTGLWTEDGV
DKIAWEVGKAGTRAQKLDVAWTGEGYQHALDANKAAADGILDNSDSRPFLWTVMGWAGMQ
RYAVTWTGDQSGSWDYIRWHIPTLIGSGLSGQAYATGDVDAIFGGSPETFTRDLQWKAFT
PVLMGMSGWSKAARKHPWWFDEPYRSINRDYLKLKMRLTPYMYTTAFETEQTGAPIVRGL
MWDYNDDPNANTEAHKYQFLLGKDMLVAPVYRSQTASKGWREDVYLPKGQWIDYWDGRVV
DAPEGGASIDYQVDLNTIPVFVRAGAIIPMYPEALYDGHKPKDVLTLDIYPYGESEYLMY
EDDGNTRRYQQGEFARQLFAVKAHEGKAGDIEVSIGAAEGKFDGQDEERVYELWLHTRTK
PDSVLLNGKKLKALKDEAALAKAKSGWTYSDTKYGTVLVKVAKTSVREALEIKLEIDDAK
VLAATAGYSVAPELGNEIPADSLLVLGRPAEESGHPLENAFDGNPDTWFRTKRDQAQKTG
AHEFTLALGERRFIAGFEIAPRNDKHWEYGQVADYEVYLGENNGEWGEPVAKGRLEKSQT
MQKVEFAPKPGSLLRFRILSTQNELGSDPMVTAAKGQGGAFNALLPKSVTPITISEFKVL
TAPEPKAPKTQLFLAEMTPQKLDKSAGSRVALNSAIGGKPMSMNGLKFSKGLGMAANGRV
DYRLEGNWQLLRADLGIDDSCKTKGGLHFKIFGDGKLMYDSGLIEAPAVVKPELDIRGVE
ILSLQTEGTAKGVCGNWANASVVGWPKG