PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6936573 FitnessBrowser__SB2B:6936573 (347 amino acids)

SeqID: 6936573 FitnessBrowser__SB2B:6936573
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6226636: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6936573 FitnessBrowser__SB2B:6936573
MTALKAMLTPLGRRELMVLALILACLLSPVLASIFGAVDISFREAMSVYLHSLIGERPTD
VAYLDSRILLELRLPRILLAFVCGAGLALSGWALQLVTRNPLADPYLFGISAGASLGAIV
VLSLGITHGVLLAIGLPLGAFIGASASVLVVLTLSGFGLQSQVERMLLSGVATSFLFGAL
GSLLLYFSSPQVTASVIFWSLGSFARAAWDLLWLPWLVFGGFVAFLLLVRRQLFALSAGD
ETAHALGVSVAKLRIISLLMCSLMTAVLVASCGGIGFVGLMIPHIARLLFPGSQSLLIVA
MLGGLFMVWVDVMTRSLLPPQELPVGVITAVVGSVFFLMLLFGRRSE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory