PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6937015 FitnessBrowser__SB2B:6937015 (585 amino acids)

SeqID: 6937015 FitnessBrowser__SB2B:6937015
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600515: phosphomannomutase AlgC[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6937015 FitnessBrowser__SB2B:6937015
MDTQLAFKVKHWLARDPDAKSRAALEALVAAGDDRALEAAFDGRLAFGTAGIRGIVGPGP
MGMNRLLVRETSAGLGAYLEAQIKDAKRRGLVIGFDGRHDSRVFAHDAACVLSAMGFKVR
LTSHVAPTPLVAFGVKHFEAAAGIVVTASHNPPKYNGYKVYWENGAQIIPPHDAGIAACI
DRAANLELPWMPEPEAVKQGRLSFLQDDFFERYRRAILHSPLLHPAGESQAGRASLGIAY
TAMHGVGAPMAERVLRDAGFSQVYSVAAQREPDGNFPTVNFPNPEEPGAMDMVIAEAGDK
GALLACANDPDADRFALAARQSDGGYRMLSGDQTGALLCDYLLSHWQGAGVPLVGNTIVS
SALLHAIAAHYGAHSYTTLTGFKWLMNTAQQLETPQQPFLFAYEEALGYTVGNLVWDKDG
ISAQLCFANLAAELLAEGKDVWAALERLYRRHGLYVNRQVSIALGEGTPDIGAWLRDNPP
TEIDKRPVVAREDLKRLRKVYADGREEEIALPASDVLIYHLGASDATPGSTARVIVRPSG
TEPKIKCYYELVLPMADDIAMADAQLQGDALMTALVDGHQAGLPR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory