PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6937555 FitnessBrowser__SB2B:6937555 (527 amino acids)

SeqID: 6937555 FitnessBrowser__SB2B:6937555
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129056: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6937555 FitnessBrowser__SB2B:6937555
MIKDFILPDIGEGVVECELVEWLVKEGDHIAEDQPICDVMTDKALVQIPAPFAGVVSKLY
YAKGEIAKVHAPLYAVEMEGEGTDASAAPAEANAQAAHDSVPVAAPVAVAGKQVEDFLLP
DIGEGIVECELVEWLVNEGDTVEEDQPIADVMTDKALVQIPALKAGKIVTLHYRKGQLAK
VHAPLYAIEVDAEHPVVPPAAAPAAAANQAERVAPSTAAVNGNGKALASPAVRRMARSLD
VDLSLVPGSGKHGRVYKEDIEQYLKGGAAPAPVAQTAAPQAAVTQSAPVLPAADDRVEPI
RGVKAAMARQMMDSVSSIPHFTYCEEIDLTELVALRERMKAKYSSDDVKLTMMPFFMKSL
SLALTEFPVVNSQVNADCTELTYKASHNIGMAVDSKVGLLVPNVKDVQSKSILDVAREIT
RLTDAARSGRVSPADLKGGTISISNIGALGGTVATPIINKPEVAIVALGKLQTLPRFGAD
GSVQARKIMQVSWSGDHRVIDGGTIARFCNLWKQYLEQPEDMLLAMR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory