PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6937617 FitnessBrowser__SB2B:6937617 (317 amino acids)

SeqID: 6937617 FitnessBrowser__SB2B:6937617
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 71164789: Thioredoxin reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6937617 FitnessBrowser__SB2B:6937617
MSQAKHSQLLILGSGPAGYTAAVYAARANLNPVMITGLQQGGQLTTTTEVENWPGDAEGL
TGPGLMARMQEHAEKFNTEIIFDHINEVTLTERPFRLKGDNGEYTCDALIIATGASAKYL
GLPSEDAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDS
FRSEKILIDRLMDKVANGNIILHLDKTLDEVVGDNMGVTGVKLKSTKDDSTEAFDVAGVF
VAIGHSPNTGIFEGQLEMNNGYIKVQSGLNGNATQTSIEGVFAAGDVMDQHYRQAITSAG
TGCMAALDAERYLDAKH