PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6937768 FitnessBrowser__SB2B:6937768 (175 amino acids)

SeqID: 6937768 FitnessBrowser__SB2B:6937768
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 71159368: Glycine cleavage system transcriptional repressor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6937768 FitnessBrowser__SB2B:6937768
MTNYLVVTAMGSDRPGIVSKLARLASDCDCDIVDSRMALFGNEFTLIMMVSGSWAAITKI
EAALPPLSVEMELLTVMKRTSRHTPQNYVSRIEVEFHGKDQRGTMKRITQFLADRSLDLA
AVRSNAEETAAGESIQHVFLAINIPEKVELDKLEKSIHELASDMSLACQIKRMQS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory