PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6937867 FitnessBrowser__SB2B:6937867 (401 amino acids)

SeqID: 6937867 FitnessBrowser__SB2B:6937867
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141509: Cystathionine beta-lyase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6937867 FitnessBrowser__SB2B:6937867
MSDKPMKTATKIVSLGREKKYSKGVINPPVFRASTIVFDTMEEMRHAAKNKHNGEMFYGR
RGTPTHFGFQAAIAELEGGAGTALYPSGAAAISASLLAFLQAGDHLLMVDSVYEPTRDLC
DKVLKGYGIETTYYDPLIGAGIEALIRPNTRVLFVESPGSITMEVQDVPTLARIAHEHGL
VVILDNTWASPINSRPFELGVDVSIQAATKYIVGHSDVMMGTATASPQYWDKLREHSYLL
GQTTSPDDVYLAARGLRTLGVRMAQHEKNALAVANWLKTRPEVDHLRHPAFEECPGHEFF
KRDFSGSNGLFSFVLKRGTVDAVTAMVEGMSHFKMGFSWGGFESLILGVTGIHNIRSATR
WDSSKPLIRVHIGLEDPEDLIEDLSAGFVRFNEVMAKETQG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory