PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6938073 FitnessBrowser__SB2B:6938073 (612 amino acids)

SeqID: 6938073 FitnessBrowser__SB2B:6938073
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 81855910: Putative multidrug export ATP-binding/permease protein SAV1866]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6938073 FitnessBrowser__SB2B:6938073
MIRLFQLFERWTPALPDTDATKPPSGLFAFCRHYTRGFEIPLISMSLLTALLAALEVSLF
GFMGQLVDWLVNKDPATLLQDEGKTLLGMTLLVLVAIPLLVLLHALIAYQSLLGNYPMSI
RWLAHRYLLKQSIGFYQNEFAGRIATKVMQSALAVRETVMKLLDVAVYILVYFTSMLVII
AQSDWRLMMPMLVWLCFYVALQWYFIPRLKRVSTEQADARSTMTGRIVDSYTNISTVKLF
SHTQREADYARDAMGSFLDTVYRQMRLVTGLNVSVQVINYMLVFAVAAIAILLWTEQAIT
IGAIAIAVSLALRLNGMSQWIMWEVSSLFENIGTVVDGMNTLSKPTQIEDAPTAKALQVN
NGAIHYKDVSFHYGEGSGVIDGLELNIRPGEKVGLVGRSGAGKSTMVNLLMRFYDVERGE
ILIDGQPINEVTQDSLRAHIGMVTQDTSLLHRTIRENILYGRPDATEDELNKAIDRAQAR
EFIEQLSDPSGNHGLDAMVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEV
EAAIQESLYQLMEGKTVIAIAHRLSTIAAMDRLIVLDEGKVVEQGSHKELVAHGGIYAQL
WAHQTGGFLGTE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory