PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6938123 FitnessBrowser__SB2B:6938123 (644 amino acids)

SeqID: 6938123 FitnessBrowser__SB2B:6938123
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6938123 FitnessBrowser__SB2B:6938123
MDFFQFLFSLKRPHKRMVSVAVDSVFLVLSFWFALFVRLDSVEVVLNSQFWLLIALVCPV
SIAAFVKLGLYRAVLRYLGTQAMTAIVLGVIVSTLAMVSFAYFLSVDLPRTVPFIFASFA
LVFVGGARALMRSLVGNGINRRGEPVIIYGAGVSGRQTALALAQSHEYHPFAFVDDDETL
HGTVIQGLHVHSPSIIKKLIKQQKASRVLLAMPSASRARRQQILQTLEPLSVKVMTLPAM
ADLVSGNKLFSDVKEVEIEDLLGRDAVAPRKDLMAANITGKVVMVTGAGGSIGSELCRQI
LRLAPRKLVLFELSEFGLYSIERELQAIRAELGLDVELFPMMGSVQRQNRVQAVMEAFKV
QTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIATGVETFVLISTDKAVRPTNVM
GTTKRMAELVLQALSKLNSGTRFCMVRFGNVLGSSGSVVPLFRKQIANGGPVTVTHPEIT
RFFMTIPEASQLVIQAGAMGIGGDVFVLDMGQSVKIVDLARKMIRLSGFEVKDEHNPDGD
IEIQFSGLRPGEKLYEELLIGDNVEGTGHERIMTAHEVFLTWEELKPVLDKLDMACHAFD
HESIRELMLKAPTGFNPTDGICDLVWLNRRHVEDRSNVVALKGQ