PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6938304 FitnessBrowser__SB2B:6938304 (336 amino acids)

SeqID: 6938304 FitnessBrowser__SB2B:6938304
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 57015393: 3-isopropylmalate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6938304 FitnessBrowser__SB2B:6938304
MSKRTITVIPGDGIGPSIIDSALKILDKAGCDFEYEFADAGLTALEKHGELLPQRTLDLI
EKNRITLKGPLTTPVGEGFTSINVTLRKKFSLYANVRPVNSFKGTQARYENIDIITVREN
TEGMYSGYGQKVSDDGSTAEATSIITRQGAEQITTFAYELARKEGRKKVTIVHKANIMKS
TSGLFLKVAREVSQRYPDITTEEMIVDATCMKLVMNPENFDVIVTTNLFGDILSDLCAGL
VGGLGMAPGANIGASAAIFEAVHGSAPDIAGKNLANPTSVILASVQMLEYLGMADKAAAI
RNAVAAVIEEGDRTTRDLGGTHGTTDFTQAVLDRLA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory