PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6938546 Sama_2649 beta alanine--pyruvate transaminase (RefSeq) (446 amino acids)

SeqID: 6938546 Sama_2649 beta alanine--pyruvate transaminase (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6938546 Sama_2649 beta alanine--pyruvate transaminase (RefSeq)
MVDFNATTGQDTPSLEHYWMPFTANRQFKASPRLLASAEGMFYKDVDGNPVLDSTAGLWC
CNAGHGRKKISEAVSHQIRELDYAPSFQMGHPLAFELASRLADIAPAGLNRIFFTNSGSE
SVDTALKMALAYHRANGQPTRTRFIGRELGYHGVGFGGISVGGIGNNRRTFSQQLLQGVD
HLPHTLDIANNAFSRGFPAHGLEKAEVLEQLITLHGAENIAAVIVEPMSGSAGVILPPQG
YLKRLRDITKKHGILLIFDEVITGFGRVGDAFASQRWGVVPDLMTTAKALNNGAIPMGAV
FVSQDVHDACMTGPEELIEFFHGYTYSGHPVAAAAALATLDIYQEEKLFERTKELEGYWE
DAVHSLRDLPNVIDIRNTGLVAGVQLSPNDEGPGRRGYKVFERCFRNGTLVRVTGDIIAM
SPPLIVEKQHIDQIVNTLGDAIRAVG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory