PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6939300 FitnessBrowser__SB2B:6939300 (241 amino acids)

SeqID: 6939300 FitnessBrowser__SB2B:6939300
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 130017: Acetoacetyl-CoA reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6939300 FitnessBrowser__SB2B:6939300
MTKRVLVTGSSRGIGKAIALRLASQGYDVAVHYHSNLTAAEATASEIADLGVKVSLLKFD
VADRAAVRAAIEADIEANGAYYGVVLNAGINRDTAFPAMTDDDWDSVIHTNLDGFYNVVQ
PTVMPMIQSRKGGRIITLASVSGIAGNRGQVNYSASKAGLIGATKALSLELAKRKITVNC
IAPGLIETDMVSEFPSEMVDQLVPMRRMGKPEEIAALAGFLMSDDAAYITRQVISVNGGM
L