PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6939496 FitnessBrowser__SB2B:6939496 (322 amino acids)

SeqID: 6939496 FitnessBrowser__SB2B:6939496
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6939496 FitnessBrowser__SB2B:6939496
MSEVLAPQTLTTAPLAIETRGMTRQFGALKAVDGVDLAIPRGSIYGFLGPNGCGKSTSIR
MLTGLLKPTSGEIRVLGEPLKGAEEKLRRRIGYMTQKFSLYENLTVLENLRFVARIYGLQ
GNKAKDRIEQLLSLYSLEGRESQMAGSMSGGQKQRLALAAATIHEPELLFLDEPTSAVDP
ENRREFWERLFDLSAKGCTILVSTHYMDEAERCHGLAILERGIKRADGSPKALMQAMGAR
VVEIGGQDLRVLKQQLLAEAPVLSAAQIGSRLRVLIRSQIDDPIAWLGQRVGTREMDEVR
PSLEDVFVTCTGQRAEGGAHVA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory