PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 6939496 Sama_3588 putative ABC-type multidrug transport system, ATPase component (RefSeq) (322 amino acids)

SeqID: 6939496 Sama_3588 putative ABC-type multidrug transport system, ATPase component (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>6939496 Sama_3588 putative ABC-type multidrug transport system, ATPase component (RefSeq)
MSEVLAPQTLTTAPLAIETRGMTRQFGALKAVDGVDLAIPRGSIYGFLGPNGCGKSTSIR
MLTGLLKPTSGEIRVLGEPLKGAEEKLRRRIGYMTQKFSLYENLTVLENLRFVARIYGLQ
GNKAKDRIEQLLSLYSLEGRESQMAGSMSGGQKQRLALAAATIHEPELLFLDEPTSAVDP
ENRREFWERLFDLSAKGCTILVSTHYMDEAERCHGLAILERGIKRADGSPKALMQAMGAR
VVEIGGQDLRVLKQQLLAEAPVLSAAQIGSRLRVLIRSQIDDPIAWLGQRVGTREMDEVR
PSLEDVFVTCTGQRAEGGAHVA