PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7023652 Shewana3_0881 polar amino acid ABC transporter, inner membrane subunit (RefSeq) (226 amino acids)

SeqID: 7023652 Shewana3_0881 polar amino acid ABC transporter, inner membrane subunit (RefSeq)
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [3 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 729594: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7023652 Shewana3_0881 polar amino acid ABC transporter, inner membrane subunit (RefSeq)
MLEAINTSLFSPIGDDGMIGILLILNGLKVTLIVTFFAMLLGAVLGVGTTLMKMSSKWYI
RFPAELYVGVIRGTPVVVQLVILYFIVLAAFDVDKVTAAIIAFGLNSGAYISEIIRAGIQ
AVDKGQTEAARSLGLSQAMTMKLIILPQAIKNILPALGNEFIVLLKETAVIGFIGGVDLM
RAGEIIRSRTFEDSIPLFTCALIYLFLTYSFTFMLSKFEKRLKQSD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory