PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7023699 FitnessBrowser__ANA3:7023699 (470 amino acids)

SeqID: 7023699 FitnessBrowser__ANA3:7023699
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597296: probable transcriptional regulator[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7023699 FitnessBrowser__ANA3:7023699
MSKYQQLAQDLKNRISQGVWQAGDKLPSLRQTVTDSGLSLMTVLNAYQLLESQGVILAQA
KSGYIVAPQPEAFRYPETQRQIYFSDRLDINEFVFNVLQASKQAGIVPFGSAFPDPSLFP
QQALARSLVKVTRQMSPSFAADNLPPGNAGLRKAISQRYAKLGMSVAPDEILITSGAMEA
LNLSLAALAQAGDWVVIESPTFYGAMQAIERLKLRAIAVATDPREGIDLNALAEVLKTYP
VKACWLMSLHQNPLGCSLSDQKKQAVYQLLCEHNVSLIEDDVYQELYVGSSAPRPIKALD
TQGCVLHCGSFSKSLIAGYRVGWVAAGRHAPQLQRLQLMSTLSTSAPMQLAIADFIQSPQ
YERHLKRLRHTLADRKFAMYQLLRAHLPESVSVNFEPGGYFLWLALPSHMDATQIYHSAL
ERGISIAPGNLFSNQAEFRHFMRINASYDCSPELVRAVKALAQILEHSPN