PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7024000 FitnessBrowser__ANA3:7024000 (337 amino acids)

SeqID: 7024000 FitnessBrowser__ANA3:7024000
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596099: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7024000 FitnessBrowser__ANA3:7024000
MIDLRSDTVTQPTEAMRLAMSRAEVGDDVYGDDPTVNSLQDMAAEMFGFESALFTASGTQ
ANLLALMAHCERGDEYLCGQQAHNYKFEGGGAAVLGSIQPQPLTNQLDGTIALTDIEAAI
KPDDIHFARTRLLSLENTIGGKVLPQTYLANAQALAFQRGLKIHLDGARVANAAVAQGIG
IADIAGHFDSVSICLSKGLCAPVGSLLLGDERLIKKATRWRKMLGGGMRQAGILAAAGKL
ALIEQVERLGEDHENAAYLAQQLSQLSEFEIDLAAVQTNMVFANLATNVDEKALAKRCRE
AGIIISPGRTLRFVTHKDVSRQDIDKVLQVFKLHLQA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory