PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7024607 FitnessBrowser__ANA3:7024607 (1614 amino acids)

SeqID: 7024607 FitnessBrowser__ANA3:7024607
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598264: NAD-dependent glutamate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.94
    Periplasmic            0.04
    CytoplasmicMembrane    0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.94

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7024607 FitnessBrowser__ANA3:7024607
MALKDAMPSVLLENVVSLIHAKVPNSQAKQVEQFATCLYAHMSKDDLNARNDSDLYGAVL
SLWNALNKTPKGETHLRVFNPSQSKHGWQSTHSIIEVIQPDMPFLVDSVGMALNRMGITA
HMMLHTPLAIERSAQDVTKVTYLNQSPDSTEHVAVFLIEIDRQSSSVDIKALEREIQSVL
GDVAASVNDWSAMSAKLSETIKELPKRPFPGEKQELEEAINFLTYLNNHHFTLLGYRQYD
LKRVEGDVELVPNMASSLGLMNKHHKTQPEQGLLLSSFSDSARKEALDHSLLILTKSSAK
SRVHRPAYVDYIGIKRFDKKGNVVGEDRFIGLYASNVYNRSPREIPLLNEKVQRVLDRSG
LTPRSHDYKALLNILENLPRDELIQANVDDLAHTAHGVLEMQDRDKLKLFVRKDGFGRFL
SCLVYVSKDRYNTKLRQDTQRILAQHFNSKEDVEFTTYFSESTLARTHYIVKVDNNNMDV
DVAAIENNLIEAARSWEDKLNTALNTALGEEAGTHLMKRYANAFEQSYKEDVLPSSAVVD
MQQLEALDDEHKLGMLFYQPQEAALNDNKVRLKLFHKDEPIHLSDVLPMLENFGLRVINE
RPYEVTTSDGSTFWILDFLMTVKVTNTDNIADSQDRFQTALSQVWQKKLEDDGFNRIILA
SGLTGREVSVLRAYAKYMRQIDATFSQAYIEETFGRYPQIADLLVKMFIRKFNPKLKTRT
LGKFMEQINLRLDEVSSLDDDRIIRRYLDLINATLRTNFYQLDAKGESKSYISFKFMPSL
IPEMPRPLPKFEIFVYSPRVEGVHLRYGKVARGGLRWSDRREDFRTEVLGLVKAQQVKNT
VIVPVGAKGGFVCKQLPTEGGREAFFTEGQECYRIFIRALLDITDNIVNGEIVHPVDVVR
HDEDDPYLVVAADKGTATFSDIANAISQEYNFWLGDAFASGGSNGYDHKKMGITARGGWE
SVKRHFREVGIDCQTTDFSCLGIGDMAGDVFGNGMLLSKHTKLVAAFNHMHIFVDPNPDT
AASYEERARLFALPRSTWEDYNSKLISKGGGIFLRSSKSIPLSAEMKQMLETEKTSMTPT
ELMKELLKMPVDLIWNGGIGTYVKSSRETHAEVGDRANDALRVNGRELRAKIVGEGGNLG
CTQLGRIEYAANGGRINTDFVDNVGGVDCSDNEVNIKILLNALVAEGELTLKQRNRLLEE
MTEEVGQIVLQDCKDQTRTISVTQVRGAEQLKEQIRFIQYLEKEGKLDRALEFLPSEEEL
AERLANGRALTRPELSVLVAYAKMVLKEQLLTQEITEDTLLSQLLIAYFPKQLQELYSHR
MVTHPLRGEIIATSLANELVNDMGLNFVQRMQDETGASVADAAICYTMAREVFGLAELTK
AITDLNGIVPAVVQGEMLHQLRRNMRRACRWFLRHRNRTWSIEQTVAFFKPVFEQIKANV
HSYLVEEEAAGIQAEINALIKENVPQEVATVVANMSTLFSALDIAQIAQAEEKTVELVAE
TYFKLGARVELHWFLEQISAQPVANHWQALARAAFREELDWQQRALTSVVLRTCSETCDA
QSVISQWIDTNQALLERWFHMLADFKTSQSHEFAKFSVALRELNLLILHCEGHK