PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7024914 FitnessBrowser__ANA3:7024914 (300 amino acids)

SeqID: 7024914 FitnessBrowser__ANA3:7024914
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Extracellular          2.00
    OuterMembrane          2.00
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    Periplasmic            2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7024914 FitnessBrowser__ANA3:7024914
MQTVTVGELLMTIPVGNRLGEGVLWDDLHQSIWWTDILSSVIYRFHLASRSLETFPMPHR
VGSFGLTAKPTTLIVAFDIGIAIYDIEDQSLTWLAQPESHFAGNRFNDGRIDRQGRFWAG
TMVEQRDTLQQTAALYCLDEKGHCHQHLTNLEISNGLCWSVDGRTLYHADSPKHQIYQYD
FDIEQGLLSRKRLFASTSHHIFPDGSDVDAAGYLWNAQWGGGQVVRYRPDGEVDLILKLP
VTHPTSIAFGGEKRDLLIVTSAKHSLDASQLDQEPQAGDVFIYPLQGIYGVNSPRFCGQL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory