PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7024958 FitnessBrowser__ANA3:7024958 (531 amino acids)

SeqID: 7024958 FitnessBrowser__ANA3:7024958
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129056: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7024958 FitnessBrowser__ANA3:7024958
MIKDFILPDIGEGVVECELVEWLVQEGDTIAEDQPIADVMTDKALVQIPAPFAGVVTKLY
YTKGDIAKVHAPLYAVQIESDEAAPVAASQPEAHTATQTPASQSSAAGTSVEEFLLPDIG
EGIVECELVEWLVQEGDTVVEDQPIADVMTDKALVQIPAIKAGKIVKLHYRKGQLAKVHA
PLFAIEVEGGVSAPVSHAQEASATAVNTAAPVACAAVSSEPARQGKALASPAVRRMARAL
DIDLSRVPGSGKHGRVYKEDITRFQAQGGAVPAAAPVAAAPTVAQSTVSTAVASAARGDI
VEPIRGVKAVMAKMMVESVSTIPHFTYCEEFDLTDLVALRESMKAKYSSDEVKLTMMPFF
MKAMSLALTQFPVLNSQVNADCTEITYKARHNIGMAVDSKVGLLVPNVKDVQDKSILEVA
AEITRLTNAARSGRVAPADLKEGTISISNIGALGGTVATPIINKPEVAIVALGKLQTLPR
FNAKGEVEARQIMQVSWSGDHRVIDGGTIARFCNLWKQYLEQPQDMLLAMR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory