PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7025095 FitnessBrowser__ANA3:7025095 (169 amino acids)

SeqID: 7025095 FitnessBrowser__ANA3:7025095
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 131515: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7025095 FitnessBrowser__ANA3:7025095
MGFLSRIRRLVSGQPQLAGGIMVYAPVNGEIVAIEKVPDVVFAEKIVGDGIAIAPKGDTI
VAPIDGTIGKIFETNHAFSIESPQGLELFVHFGVGTVELRGRGFSRLAEEGQEVKVGDPI
LSFDIDYLKDQVDSLLTPVVLANMEDVKYLDKAQGSVTAGKDAIFTVQL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory