PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7025212 FitnessBrowser__ANA3:7025212 (164 amino acids)

SeqID: 7025212 FitnessBrowser__ANA3:7025212
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596969: probable methyltransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7025212 FitnessBrowser__ANA3:7025212
MLDLLPDLFDHYPTKLSLLPLDFRSFGGKRLFWGEVVTVKCFEDNSKVKEVLAQPGHGKV
LVVDGGGSPRRALLGDLIAQSALDNGWQGVVINGYVRDVARLSTFNLGVYALGAMPIKTE
KLNQGHIDVPIEFGAVTVKPGMMLYADENGIAVSEASLNFAFLS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory