PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7025861 FitnessBrowser__ANA3:7025861 (380 amino acids)

SeqID: 7025861 FitnessBrowser__ANA3:7025861
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 124028636: Flavohemoprotein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7025861 FitnessBrowser__ANA3:7025861
MDTKTMNISTMQNIMPSPALSSAPASVVGFSQLVCVERWNETADVVSFRFQAGEPMKFDY
KPGQFMTLVLEINGEQACRSYTLSSTPSRPYSLMLTIKRVDGGLVSNYLIDHLQPGQTVR
VLPPTGQFNLFDIPAKKYLFLSAGCGITPMYSMSRYLTDSQMNADIAFVHSARTQADIIF
KTSLETMATRHRDFKLRYIVEDVTADTAWHPEAVLHNVGRLRPDNLRDLVPDFAERTVFL
CGPEPYMQAVKTILAELNFDMTQLYHESFATAVKEAQSRVKQAEMQTEAPESGSNSFMLS
IGDKKRALTAEQTLLEGIEAEGLPIIAACRSGVCGACKCQVLEGETESTSSMTLTPSEIE
AGYVLACSTKLKSDVTLSLT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory