PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7025948 Shewana3_3096 spermidine/putrescine ABC transporter ATPase subunit (RefSeq) (378 amino acids)

SeqID: 7025948 Shewana3_3096 spermidine/putrescine ABC transporter ATPase subunit (RefSeq)
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7025948 Shewana3_3096 spermidine/putrescine ABC transporter ATPase subunit (RefSeq)
MASTSGVTNKPTTKTQEKVLLKIERVSKLFDDVRAVDDVSLTINKGEIFALLGGSGSGKS
TLLRMLAGFERPTSGRIFLDGEDITDLPPYERPINMMFQSYALFPHMTVAQNIAFGLKQD
KLPKAEIEQRVQEMLKLVHMEQYGKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA
LDKKLRTQMQLEVVEILERVGVTCVMVTHDQEEAMTMAGRISIMSDGWIAQTGSPMDIYE
SPNSRMIAEFIGSVNLFGGEIEVDEVDHLIIKPNDLAQPFYVGYGVTTSAEEKHVWLAVR
PEKTIISREQPEGEYNWAKGIVHDIAYLGGISVYYIRLENGQIVQCSMTNRERRADHATW
DDEVFISWEDTSGVVLRS