PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7026032 FitnessBrowser__ANA3:7026032 (397 amino acids)

SeqID: 7026032 FitnessBrowser__ANA3:7026032
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 123413: Flavohemoprotein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7026032 FitnessBrowser__ANA3:7026032
MLDSRTIQVIKSTIPLLESAGPVLTQHFYERMFKHNPELKDVFNLAHQHSGGQPVALFNA
VAAYAKNIDNLGALGSAVERIAHKHTGFLIQPEQYAIVGSHLLATLKELGGKAVTEEVLT
AWADAYGFLANIFINREAQIYQESAQQDGGWSGVREFIISEKKAESLEIASFVLTPVDGK
AVKDFIPGQYLSIKAQHPKLAFDEIRQYSLSDAPNGQSYRITVKRELNGQVSNLLHDVLQ
VGDTLSVMPPAGDFTLAVQAETPVVLISAGVGQTPMKSMLNQLLKLRHPSTVTWLHACEH
GGVHGFKSAIKNKLGQHANLASHVWYREPTKADMLGQDYDFEGTMNLTSVADKIVANAHY
YFCGPIGFMASIKQQLLAFGVPSEQMHYEVFGPHAEL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory