Running PSORTb v3.0 on 7026296 FitnessBrowser__ANA3:7026296 (1517 amino acids)
SeqID: 7026296 FitnessBrowser__ANA3:7026296 Analysis Report: CMSVM- CytoplasmicMembrane [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Cytoplasmic [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: CytoplasmicMembrane 8.46 Cytoplasmic 1.33 Periplasmic 0.21 OuterMembrane 0.00 Extracellular 0.00 Final Prediction: CytoplasmicMembrane 8.46 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
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Predict transmembrane helices and signal peptides: Phobius
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>7026296 FitnessBrowser__ANA3:7026296 MTSNNQPTHMTQAQTPDPLFLQAEHLAKDFSLFPKHSKQSLSDEIKGLLNDDAIQANLKD LASLDVDGYVAKVIQPTQDKGRPGAKRIIADLKGRLITETHLGSFYSAEVELNFGSRTRR IGFIAQERTTANGAWMPEHHYAACKAIRHFAELSMPIVYLIDTPGADAGEVANSQNQAHS ISKAIAESANVDVPTVGIVIGAGYSGGAIPLAAANILLSLRDGIFNTIQPQGLQSIARKY NLSWQECAKSVGVSPEELYTAGCIDGIIDFSPGDRDERQHNLRRAIISSIEAVERAAINF VRESKDLREHYDRSLARFLSPSKNLMALELNAELAVATSPTNHHNLFGSAYRYLRYLTLR SRIHSISQEQYGRLSRVSVPEGDLLARIQQEQDRVFQAWLSSPDKLVYDEDLNKLWANFI AKRDEVSTERNMLTRLILGEPKENYKKARKALLFNIGWSLYHRWKSNAANNFKGLIQHLE NLPKSVTQAKWPELNQLTVLDVVVNDELREDFIWQCHNILIFNSLYDNVVGSLASIAKEA MMAKSLSRNSVNNLLHKSIDHALSTQDTANDKAKFYKWLKYFMGQSNRADLLVRVEQWKS VGFPQLNDSLFVILTYFFERLLPEYFDSESDNSKYTGAINPVRIGRRKDFWNRLTMGYQD LLIQKVLRDEKRTGKMTWENVIKQFFTHFEEINGDKMSANLLNFPGFRLSIEDALDKGIR PCGLITGIADFKEKGQKVRVGVAVSNTAFQAGAFDMASAEKFSALLIECAKRKLPVVCFI SSGGMQTKEGAAALFSMAVVNDRITRFIRDNELPVLMFGFGDCTGGAQASFVTHPLVQTY YLSGTNMPFAGQMVVPAYLPSTSTLSNYLSKVPGAMAGLVHNPFSETLDNQLASIDPLMP MPTAKISDVIINALSTLVVEAPVEEEVIVQNDPRKLMKPINKVLVHARGCTAVKLIRKAH DNDINVVLVASDPDMTAVPADMLKDSDKLVCLGGNTSDESYLNAYSVLKVAEYEQVDALH PGIGFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTSQSQNVPVVPGSHGILT NAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQKTSTEAAAAFGNGDLYL EKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESGSTMLPEELKKQVLDYT RALGDATDYMGAGTVEFIYNLDANEVYFMEMNTRLQVEHPVTEATSGIDIVSAQFDIAAG RSIENLEPKEIGYAMEVRVTAEKAALDSHGVLQLIPNPGKITECVFPDHPDVEIISIAAA GKEVSPYYDSLIAQVIMRGENREDVIAKLHAYLDSVVLKGIATNIPLLKLILSDGTFKEG VYDTNYLPRFMAELDIPALIAEMEAAAETVGVDTESLRVGESNELKVLAQGAGIFYTSPA PGEPDFVKEGDIVTADQTLALTEAMKMFSQVNLAGFNRQGAVLYPEDKKYRIERILNSNG QQVSQGDLLFVVSPVED
Lawrence Berkeley National Laboratory