PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7026304 FitnessBrowser__ANA3:7026304 (464 amino acids)

SeqID: 7026304 FitnessBrowser__ANA3:7026304
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS00123: ALKALINE_PHOSPHATASE Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 17979023: Alkaline phosphatase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00
  Secondary localization(s):
    Cellwall              

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7026304 FitnessBrowser__ANA3:7026304
MSFTKAPLLLLGMSLWLSNSALAVEAGANETGPVKAPSRPKNIVIMIGDGMGPSYTSAYR
YYKDNPDTEEVEQTVFDRLLVGMASTYPASVSGYVTDSAAAATALATGVKSYNGAISVDT
QKQPLPTIFEKAKTLGLSTGVAVTSQINHATPAAFLSHNESRKNYDALALSYLETNADVF
LGGGQKYFPPELLAQFTAKGYQHITRFDDLASITQPKVLGLFAEVQLPWAIDEKDAKKLS
TLTQKALSLLSQNEQGFVLLVEGSLIDWAGHNNDIAAAMGEMDEFANAIEVVEQFVRQNP
DTLMVITADHNTGGLSIGADGNYNWNPEILRNISASSDTLAQAALGGDTWQADLSRGLGF
ELTEEEVTKLNVARMQGLETMAVAIRHVIDKRTDTGWTTGGHTGTDVQVFAAGPASELFN
GHQDNTDIANKIFSLLPKPKKPKATAQVSTPAPAPELAPVQSQS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory