PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7026322 FitnessBrowser__ANA3:7026322 (568 amino acids)

SeqID: 7026322 FitnessBrowser__ANA3:7026322
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7026322 FitnessBrowser__ANA3:7026322
MFEVTEVSIAELREALESGRRTAVELVKSYLARVAAYDGPATETKLNALVVHNPDALKEA
EASDARRARGETLSPLDGIPYTAKDSYLVKGLTAASGSPAFKDLVAQYDAFAVERLRAAG
AICLGKTNMPPMANGGMQRGHYGRAESPYNANYLTAPFASGSSNGAGTGTAASYSAFGLA
EETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYTRTMADMLEVLDVIVA
DDPITRGDLWRLQPWVQIPKASSVRPESYLALAASADTLKGKRFGVPRMYINKDELAGTS
ENPGIGGPTGQRIHTRQSVIDLWEAARKALEAAGAEVIEVDFPLVSNCEGDRPGAPTVFN
RGIVTPQFLHDELWELSGWAFDEFLRANNDPKLNKLEDVVGHLIFPHDLGTLPNREGDLA
AGMEEYVNMAKRGLKSYDQIDSIPDGLRGLEKTRKLDLEDWMDGLKLDAVLFPTVADVGP
ADAHVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDD
NNLLKFAGAFESTGNKRMVPPRTPPLSQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory