PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7026359 FitnessBrowser__ANA3:7026359 (364 amino acids)

SeqID: 7026359 FitnessBrowser__ANA3:7026359
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 7388257: Sarcosine oxidase subunit alpha]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7026359 FitnessBrowser__ANA3:7026359
MANKTVLFNKHLESNAKMVDFHGWDMPLNYGSQIEEHHAVRQDAGMFDVSHMTVVDVTGT
DACAFLRKLLANDVAKLKVPGKALYGGMLDDNAGIIDDLITYYLTDTFYRVVVNSATREK
DLAWIAKQSQGFDVTVTERPELAMIAVQGPNAKAKAAAVFSADQNAAIEGMKPFFGKQAG
SLFIATTGYTGEVGYEIIVPETEAEALWQALLDQGVKPCGLGARDTLRLEAGMNLYGLDM
DETINPLAANMGWTIAWEPTDRDFIGRQALEALRDAGTDKLVGLVMEEKGVLRHDMPVFF
TDAAGVEQQGVITSGTFSPTLGYSIAMARVPNSIGDTAEVEMRKKRVAVRVVAPNFVRNG
KQAF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory