PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7026858 FitnessBrowser__ANA3:7026858 (418 amino acids)

SeqID: 7026858 FitnessBrowser__ANA3:7026858
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 127483: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7026858 FitnessBrowser__ANA3:7026858
MANHMNAVKNKPVGKSLLGGAMIIAGTTVGAGMFSLPVVGAGMWFGYSVLMLLGIWFCML
MSGLLLLETNLHFEPGASFDTLTKETLGQFWRIVNGVSIAFVLYILTYAYISGGGSIVNH
SLQGMGIELPQSVAGLVFAVVLACIVLISTKAVDRITTIMLGGMIITFFLAIGNLLIEID
VTKLLEPDGNQSFMPYLWAALPFGLASFGYHGNVPSLVKYYGKDSSTIIKAIFVGTFIAL
IIYACWLVATMGNIPRSQFSEIIAQGGNMGVLVGALSKVMESSWLNSMLTLFANLAVASS
FLGVTLGLFDYLADLFGFDDTRSGRMKTAIVTFVPPTILGLLFPDGFLIAIGFAALAATV
WAVIVPALMAYKSRQQFPNHQGFRVFGGTPLIILVVLYGVVTGACHLLAMANLLPQFS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory