PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 7026999 FitnessBrowser__ANA3:7026999 (609 amino acids)

SeqID: 7026999 FitnessBrowser__ANA3:7026999
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3915705: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>7026999 FitnessBrowser__ANA3:7026999
MCGIVGAVAQRDVAEILVEGLRRLEYRGYDSAGVAVIHNGELNRTRRVGKVQELSAALET
DPLAGGTGIAHTRWATHGEPSERNAHPHLSEGDIAVVHNGIIENHHKLREMLKEHGYHFS
SDTDTEVICHLVHHELKSNDTLLAAVQATVKQLEGAYGTVVIDRRDSERMVVARSGSPLV
IGFGLGENFVASDQLALLPVTRSFAFLEEGDVAEVTRRTVSIFDVHGNKVEREVKESEIT
HDAGDKGEYRHYMLKEIYEQPLALTRTIEGRIANKQVLDTAFGDNAAEFLKDIKHVQIIA
CGTSYHAGMAARYWLEDWAGVSCNVEIASEFRYRKSHLFPNSLLVTISQSGETADTLAAM
RLAKEMGYKATLTICNAPGSSLVRESDMAYMMKAGAEIGVASTKAFTVQLAGLLMLTAVI
GRHNGMSEQMQAEITQSLQSMPAKVEQALGLDDAIAELAEDFADKHHALFLGRGDQYPIA
MEGALKLKEISYIHAEAYASGELKHGPLALIDADMPVIVVAPNNELLEKLKSNVEEVRAR
GGLMYVFADVDAEFESDETMKVIPVPHCDIFMAPLIYTIPLQLLSYHVALIKGTDVDQPR
NLAKSVTVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory