PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8500403 FitnessBrowser__Miya:8500403 (434 amino acids)

SeqID: 8500403 FitnessBrowser__Miya:8500403
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8500403 FitnessBrowser__Miya:8500403
MEFFDIAETWSREAIAAAQIVRLRNTVEQAMKSPFYGQRLKEAGVTPGSIRSLDDVRRIP
LTSKDDLRAQYPDGLICVPKSELVRMHASSGTTGTPTVVYHTQSDLNSWADLMARCMHMV
GIRREDVFQNMAGYGLFTGGLGIHYGAERLGCLTIPAGAGNTRRQVKLVRDFRTTVAHII
PSYALYLGAALRDEGEDPAGLPLRIALIGAEPHTEEARRRIEDMLGLKAYNSYGLSEMNG
PGVAFECVHQNGLHVWEDAYIAEIIDPATGEAVPDGEVGELVMTTLCRQGMPVLRYRTRD
LTRFLPGECPCGRVHRRLDRILGRADDMLIVKGVNIYPMQVEQVLMGFPEVGQNYLIVLE
RDDFRDVLRVKVEIRDEYFEEDMRKLHGLRERITRRIHDEILVTPKVDLVQHNSLPKSEG
KAQRVQDLRERPAL