PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8500756 DvMF_1497 transport system permease protein (RefSeq) (387 amino acids)

SeqID: 8500756 DvMF_1497 transport system permease protein (RefSeq)
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6226636: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8500756 DvMF_1497 transport system permease protein (RefSeq)
MHNATAPRSVPPQAWAGAARPRRTLRIILLAALCWAATVVLACLFGPFHIAVGDVLRALA
ELALPGGLADGAGATPDATHMLVVTRIRLARVCLALLAGGGLAVAGTVFQGVLRNPLADP
FTLGVSGGAAFGASLALTLGIGPLAAWLTMHLPAFAALSPQALLPLAALAGALASLGAVL
LLGGAAGGGFRRETVVLAGVVVSTVLSALVSLVKALDEESVSSIVFWIMGSLQGRGWAHA
AVLLPWLALGLLLVLPRFRELDILALGDVQARQLGMDTARVRLQLLVGASLITAGCVAVS
GVIGFVGLVVPHLARMRLGAAHGPLLAAGWFGGGVLLAWADVLARTLLPGGAELPVGVVT
ALLGGPFFCLLLVRGGRGAAVRTGGTP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory