PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8500829 FitnessBrowser__Miya:8500829 (226 amino acids)

SeqID: 8500829 FitnessBrowser__Miya:8500829
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027924: Inner membrane amino-acid ABC transporter permease protein yecS]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8500829 FitnessBrowser__Miya:8500829
MLESITTIIEALPYILEGSLVTVATVFGAMALGLLLGVPMSVAQVYGALPVRLVVGFYVW
FFRGMPILVLLLLFYFGLFQLIGLNLSAFTASCLVLGMTSAAYQSQIFRGAILALPQGQL
RAARALGMSDGTAIRSIVLPQALRLSIPGWSNEYSILLKDSALAFVLGTPEIMARTHFVA
SRTYEHLPLYMTAGALYFVITLIGLKVLRRLEHKLHIPGYASHGPL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory