PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8501445 DvMF_2175 transcriptional regulator, GntR family with aminotransferase domain (RefSeq) (498 amino acids)

SeqID: 8501445 DvMF_2175 transcriptional regulator, GntR family with aminotransferase domain (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597296: probable transcriptional regulator[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8501445 DvMF_2175 transcriptional regulator, GntR family with aminotransferase domain (RefSeq)
MDGDAGSDASAVTGSTPAADAAAFHYHRVERHVTDMIQSGRFRPGDRLPSLRGLSTSMGL
SIATVGHAYLELERKGIIEARPRSGYFVRQGMRGLPVPQARPAPPTGPREVNRARLISTV
LEAVGNRDLVPFGVLCPDETLLPGRALGRILSEVMRSRAGEAAAYATIPGDLELRRQIAW
RHRECGVGAGPDDILITNGAVEALYIALRCLTRPGDIVMIQSPTYYCFLQLIESLGLRAI
EVPSTPEAGVDPRDVRHILDRHRVAACAFSPNFNNPDGSLTPDDAKREILDMLAERGIHL
IEDDVSTDLHYGPSRPSTFLQWDVHGLVTLCSSFSKTVAPGFRMGWMVTGRIGERAREIK
ATTNVCGATLTQFAMAEYLRQGLFERQLRRLRTAFSRQMQAMRMHLADCFPSGTGVTRPE
GGGVLWLELPPGTDGVELFFRARQAGISVAPGAVFSTQEKFANYLRLGCNGLWNERMAEG
LRTLGRLAGECRTGAGMK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory