PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8501683 DvMF_2401 nickel transporter permease NikB (RefSeq) (313 amino acids)

SeqID: 8501683 DvMF_2401 nickel transporter permease NikB (RefSeq)
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 34395956: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8501683 DvMF_2401 nickel transporter permease NikB (RefSeq)
MPAYILKRLAALIPLLLLVSVVVFLLLRAAQGDPAMAYLRLSRIPPTDEALATARRMLEL
DLPLWEQYARWLARAVTGDFGNSYVTGRPVLGEVLHYLPATLQLAGAALLLTLIVSIPLG
VGAALHRDRPLDNAARALSFTSVSLPNFWLGFLLVWLFAVKLGWLPALGRGGLEHLVLPA
VTLSLMSMGINTRLIRASLLENMHARHIMYARARGISERGVVWRHMFKNSLIPVLTSLGM
HVGELLGGAVIVETVFAWPGVGRYAVSAVYNRDYPILQCFMLLMTAIFVLCNLAVDILYA
WADPRIRLGEDRA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory