PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8502261 FitnessBrowser__Miya:8502261 (286 amino acids)

SeqID: 8502261 FitnessBrowser__Miya:8502261
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 400832: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8502261 FitnessBrowser__Miya:8502261
MIRSLPRSRGYTMGYGLYVTLYFVFLFAPLAVTCVLAFNDSQFPSLPWKGFTLDWFLADL
PARTGIFHDRGNLSSIFTSAQTAILVSALATLVGTCAAFLFEQEEFPLKGALYFLMLAPL
VVPGVILGISILIAATTAGTFMEDVLGIDVGILRPGFWLVVLGQFSFITTFVTLVVSARL
KKFDRTLEEAALNLGATRLEVIRYITLPFLRTAIIGAGAVAFLMSFENFNTTLFLVGSEP
TLPINLYLQVRDGSTPVINAISFLLIVGTSLVACVNLYAGRKPEAS