PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8502295 DvMF_3003 putative transcriptional regulator, GntR family (RefSeq) (394 amino acids)

SeqID: 8502295 DvMF_3003 putative transcriptional regulator, GntR family (RefSeq)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597296: probable transcriptional regulator[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8502295 DvMF_3003 putative transcriptional regulator, GntR family (RefSeq)
MRLAQRMESVPRSYIREILKVTAQPDIISFAGGLPHPASFPVDAVASAAASVLEEAGPEA
LQYTTTEGFPPLRQWIADRYKRQGINVSPDDILITTGSQQALDLVAKACIDRGGRVVMER
PGYLGAIQCFSVFGPDFVTVPLTPRGVDTDALRKAATGAQVFYAVPSFQNPSGITYDEQT
RREVAEIMAETGCLMVEDNPYGELRFMGQHLPPVRAYMQAPSVLLGSFSKVVSPGLRLGW
VCAPQEVLNPMITAKQASDLHTPGFTQRILHRYLMDNDVDKHIASIRARYGAQRDAMVQA
IRRHFPEDVACTEPEGGMFLWCTLPEGISAEALFHKAIERKVAFVPGRPFYVDETDDTFR
LNFSNSSPELIEEGIARLGQCLREYLGKGQAGAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory