PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_01420 FitnessBrowser__pseudo3_N2E3:AO353_01420 (771 amino acids)

SeqID: AO353_01420 FitnessBrowser__pseudo3_N2E3:AO353_01420
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_01420 FitnessBrowser__pseudo3_N2E3:AO353_01420
MSQLPNDFALSNLSRRGFLKGVSATGALVLAASWGWQDAFAEEKKFGAAGMPNGWIDDPK
VYVSIAADGSVTVVCNRSEMGQGVRTSLSMVVADELDADWAMVKVRQAPGDEVRFGNQDT
DGSRSMRHWYEPMRRCGAAARTMLEQAAADQWKVPVGECRAQLHKVIHQPTGRELGYGAL
AVAAGALAVPARESLRLKQSSEFRYIGKEGTKAIDGADIVNGRAVYGADVHFDGMLFATV
ARPAVYGGKVKSFDASAALKVPGVVKVIQIESRPLPSEFQPLGGVAVIASNTWAAIKGRE
ALKIEWDDGANAGYDSIVYRKELEAAALKPGKVVRSTGNIEEAMNSADSSLEAAYYLPHL
AQSPMEPMVAVARFKDGHCEAWAPSQAPQVTRERIAERLGIPFDKVTVNVTLLGGGFGRK
SKPDFILEAAILAKEFPGKAVRVQWTREDDIHCSYFHTVSAEYLKASLNKDGMPSGWLHR
TVAPSITALFAPGMNHEAAFELGMGFTNMAYAIPNVRLENPDAAAHTRVGWYRSVSNIPH
GFAIQSFVDELAHKAGQDPLKYQIKLLGPDRQIDPRTLSEEWNYGESPERYPIDTARLRG
VLETAAKGAGWGRKLPKGRGLGLAVHYSFVTYVAAVIEVEVKDDGTLIVHKADIAVDCGP
QINPERIRSQFEGACVMGLGNAVLGEISFKDGKVQQDNFHMYEVARMSLAPKEVAVHLVT
PAGNVPLGGVGEPGVPPIAPALCNAIFAATGKRIRSLPVRYQLQGWQQSKA