PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_01425 FitnessBrowser__pseudo3_N2E3:AO353_01425 (156 amino acids)

SeqID: AO353_01425 FitnessBrowser__pseudo3_N2E3:AO353_01425
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597575: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_01425 FitnessBrowser__pseudo3_N2E3:AO353_01425
MITLKLNGQDHQLDVTEDMPLLWAIRDVAGYSGTKFGCGMGLCGACTIHIDGAPARSCIT
PIGSVIGQDVSTIDNLHSDPVGQVVQQAWLDTAVAQCGFCQGGQIMSATALLKTNPNPSD
EQIEQAMVGNICRCGTYNRIKTAIRQASTHLQERKA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory