PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_03245 FitnessBrowser__pseudo3_N2E3:AO353_03245 (450 amino acids)

SeqID: AO353_03245 FitnessBrowser__pseudo3_N2E3:AO353_03245
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121517: Gluconate permease]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_03245 FitnessBrowser__pseudo3_N2E3:AO353_03245
MFGMSHESFLLLDAVITVIGLIVLITKFKLHPFIALIIAAAFLGLTSGMPIGTIIKAFQD
GFGGVLGFVGIILALGTMLGKMMAESGGADQIAQTLIRAFGKERVQWAMMFAAFLVGIPL
FFEIGFVLLIPLVFIVARRTGVSIIKIGIPLLAGLSAVHGLVPPHPGPLLAIGVFGADIG
KTILYGLIVALPTAIIAGPIYGTFIAKYIPGHPNQELVDQLAREPHSSTLPSFSITLITV
LLPVFLMLLKTFADIALPDGHFFRTWMDMIGHPISALLLALLLSLYTFGHRQGIGSKQIL
KLLDASLAPTAAIILIIGAGGGFKQMLVTSGVGDVIGHMAVSAQISPILLAWLVAAVIRV
ATGSATVATITGAGIVVPVVGMIPGVNRELLVLATGAGSLILSHVNDAGFWLVKQYFNMT
VAETFKTWTAMETILSVVALGFILLLSLVV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory