PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_03250 FitnessBrowser__pseudo3_N2E3:AO353_03250 (177 amino acids)

SeqID: AO353_03250 FitnessBrowser__pseudo3_N2E3:AO353_03250
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    OuterMembrane          2.00
    Cytoplasmic            2.00
    Extracellular          2.00
    CytoplasmicMembrane    2.00
    Periplasmic            2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_03250 FitnessBrowser__pseudo3_N2E3:AO353_03250
MSQPITALVIMGVAGCGKSSVSEALCQLSGATGIEGDTFHPAANIEKMSAGIPLNDDDRA
GWLDSLCEELRRVDASGARPVLTCSALKHSYRERLRSALPGLGFVFLELTPEVAADRVAH
RPGHFMPSTLIASQFATLESPVGEPLTLALDASKHNVDELARQAHAWWLSHGLKLAG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory