PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_03310 FitnessBrowser__pseudo3_N2E3:AO353_03310 (566 amino acids)

SeqID: AO353_03310 FitnessBrowser__pseudo3_N2E3:AO353_03310
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_03310 FitnessBrowser__pseudo3_N2E3:AO353_03310
MIEDFWKDKYPAGIAAEINPDEYPNIQAVLKQSCQRFANKPAFSNLGKTLTYGELYELSG
AFAAYLQQHTDLQPGDRIAVQLPNLLQYPIAVFGAIRAGLIVVNTNPLYTAREMEHQFND
SGAKALVCLANMAHLAEAVVPKTGVKHVIVTEVADLLPPLKRLLINSVIKYVKKMVPAYH
LPKAVKFNDVLSKGHGQPVTEANPASSDVAVLQYTGGTTGVAKGAMLTHRNLVANMMQCR
ALMGSNLNEGCEILITPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELSKWK
FSGFVGLNTLFVALCNNEAFRKLDFSGLKITLSGGMALQLAAAERWKAVTGCAICEGYGM
TETSPVATVNPNQNIQIGTIGIPVPSTLCKVIDDAGVEQPLGEIGELCVKGPQVMKGYWQ
RQEATDEILDSEGWLKTGDIALIQPDGYMRIVDRKKDMILVSGFNVYPNELEDVLATLPG
VLQCAAIGVPDEKSGEAIKIFIVAKPGVTLTKEQVMTHMRANVTGYKVPRAIEFRDALPT
TNVGKILRRELRDEELKKLGLKKVSA