PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_03395 AO353_03395 sugar ABC transporter substrate-binding protein (435 amino acids)

SeqID: AO353_03395 AO353_03395 sugar ABC transporter substrate-binding protein
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15598386: probable binding protein component of ABC sugar transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_03395 AO353_03395 sugar ABC transporter substrate-binding protein
MNAISRLATVVSLATLFPLTAFPLSALAADSKGSVEVVHWWTSGGEKAAVDVLKAQVEKD
GFTWKDGAVAGGGGATAMTVLKSRAVAGNPPGVAQIKGPDIQEWGSTGLLSTDALKGVSK
AENWDGLLSKKVSDTVKYEGDYVAVPVNIHRVNWLWINPAVFKKAGIDKAPTTLEEFYAA
GDKLKAAGFIALAHGGQPWQDSTVFEDVVLSVMGPEGYKKALVDLDQKTLSGPEMVKSFT
ELKKLTGYMDPNRAGRDWNIAAADVINGKAGMQMMGDWAKSEWTAAHKVAGKDYQCVPFP
GTEKAFTYNIDSLAVFKLKADRTGDIAAQQDLAKVALGKDFQKVFSINKGSIPVRTDMLN
DMSAAGFDSCAQASAKDFLADEKTGGLQPSMAHNMATSLAVQGAIFDVVTNFMNDKSADP
AKASAQLASAIKAAQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory