PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_03865 FitnessBrowser__pseudo3_N2E3:AO353_03865 (545 amino acids)

SeqID: AO353_03865 FitnessBrowser__pseudo3_N2E3:AO353_03865
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_03865 FitnessBrowser__pseudo3_N2E3:AO353_03865
MATCGEVLVKLLEGYGVEQVFGIPGVHTVELYRGLARSSINHVTPRHEQGAGFMADGYAR
TSGKPGVCFIITGPGMTNITTAMGQAYADSIPMLVISSVQSRNQLGGGRGKLHELPNQSA
LVAGVAAFSHTLMSAAELPGVLARAFALFQAGRPRPVHIEIPLDVLVEDADALLASQPVN
ITRAGAAPSAVAQMSELLANAKRPLILAGGGSIDAAAELTRLAELLDAPVALTINAKGML
PSAHPLLIGSTQTLVATRALVADADVVLAIGTELAETDYDVTFAGGFEIPGTLLRVDIDS
DQTVRNYPPKVALVSDAQSAAQALLDGVAKHSLAERCSDWGQARAASLRAELETIWDAPT
RAQTLFLQTVQDELPEAVFVGDSTQPVYTGNLTFNPERPRRWFNSSTGYGTLGYALPAAI
GAWLGGGQERNSRPPVVCLIGDGGLQFTLPELASAVEARTPVIVLLWNNQGYEEIKKYMV
NRDIEPVGVDIYTPDFIAVAKGLGCAAHAVSGVEELRAALRAATDRQGPTLIEIDQAQWM
KAVSA