PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_04155 FitnessBrowser__pseudo3_N2E3:AO353_04155 (306 amino acids)

SeqID: AO353_04155 FitnessBrowser__pseudo3_N2E3:AO353_04155
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 12230948: Ornithine carbamoyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_04155 FitnessBrowser__pseudo3_N2E3:AO353_04155
MSARHFLSLMDCTPEELVSVIRRGIELKDLRNRGVLFEPLKNRVLGMIFEKSSTRTRLSF
EAGMIQLGGQAIFLSPRDTQLGRGEPIGDCAIVMSRMLDAVMIRTFAHSTLTEFAANSRV
PVINGLSDDLHPCQLLADMQTFLEHRGSIQGKTVAWIGDGNNMCNSYIEAAIQFDFQLRI
ACPEGYEPNPEFVAKAGDRVTIVRDPREAVRGAHLVSTDVWTSMGQEEETAKRLKLFAPF
QVNRALLDLAAADVLFMHCLPAHRGEEISLDLLDDPRSVAWDQAENRLHAQKALLEFLVP
PSYHHA