PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_04615 FitnessBrowser__pseudo3_N2E3:AO353_04615 (343 amino acids)

SeqID: AO353_04615 FitnessBrowser__pseudo3_N2E3:AO353_04615
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 3182887: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_04615 FitnessBrowser__pseudo3_N2E3:AO353_04615
MKMLKSTLAVVTAAAVLGVSGFAQAGATLDAVQKKGFVQCGVSDGLPGFSVPDSTGKIVG
IDADYCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEIDMLSRNSTMTSSRDAGMGLKF
PGFITYYDGVGFLANSKLGVKSAKELDGATICIQAGTTTELNVSDYFRANGLKYTPITFD
TSDESAKSLESGRCDVLTSDKSQLYAQRSKLASPKDYVVLPETISKEPLGPVVRNGDDEW
LAIVRWVGYAMLNAEEAGITSKNVEAEAKSTKNPDVARLLGTDGEYGKDLKLPKDWVVKI
VKQVGNYGEVFEKNLGKSTPLEIDRGLNALWTNGGIQYAPPVR