PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_07560 FitnessBrowser__pseudo3_N2E3:AO353_07560 (725 amino acids)

SeqID: AO353_07560 FitnessBrowser__pseudo3_N2E3:AO353_07560
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1170877: Malate synthase G]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_07560 FitnessBrowser__pseudo3_N2E3:AO353_07560
MTEHVQVGGLQVAKVLFDFVNNEAIPGSGLTADKFWAGADKVIHDLAPKNKALLAKRDDL
QARIDAWHQSRAGQAHDAVAYKAFLQDIGYLLPEAADFQATTQNVDDEIARMAGPQLVVP
VMNARFALNASNARWGSLYDALYGTDAISEADGAEKGKGYNKVRGDKVIAFARAFLDEAA
PLAAGSHVDSTGYKIVDRKLVVSLKGGSNSGLRNDAQLIGFHGDAAAPTAILLKNNGLHF
EIQIDASTPVGQTDAAGVKDVLMEAALTTIMDCEDSVAAVDADDKVVIYRNWLGLMKGDL
SEEVAKGGKTFTRTMNADRTYTAPDGSELSLHGRSLLFVRNVGHLMTIDAILDKNGNEVP
EGILDGLVTNLAALHSLNGNTTRKNSRTGSVYIVKPKMHGPEEAAFTNELFGRIEDVLEL
PRNTLKVGIMDEERRTTVNLKACIKAASERVVFINTGFLDRTGDEIHTSMEAGAMVRKAD
MKAEKWISAYENWNVDIGLSTGLQGRAQIGKGMWAMPDLMAAMLEQKIAHPLAGANTAWV
PSPTAAALHALHYHKVDVFARQAELAKRARASLDDILTIPLASDPNWTAEQIQNELDNNA
QGILGYVVRWIDQGVGCSKVPDINDVGLMEDRATLRISSQHIANWLRHGIVSEAQVLETL
KRMAPVVDRQNANDPLYRPLAPNFDSNIAFQAAVELVIEGTKQPNGYTEPVLHRRRREFK
AANGL