PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_07795 FitnessBrowser__pseudo3_N2E3:AO353_07795 (665 amino acids)

SeqID: AO353_07795 FitnessBrowser__pseudo3_N2E3:AO353_07795
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 114921: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_07795 FitnessBrowser__pseudo3_N2E3:AO353_07795
MSSASLIKTPPEKVTVNGWVFYTSTALILLLTAILIAAPQEAGRMLGIAQAWLSRSFGWY
YMVVIAAYLVFVVGLAFSSYGKLKLGSKDDTPDFSYGAWAGMLFSSGIGISLLYFGASEP
LDHYFNPPEGAAGSNLAARQAVQLTFLHWGLHGWAIYALVGLAVAYFAYRHNQPLALRSA
LYPLVGERWVKGAAGHAVDGFGMFVTLLGLVTNLGIGSLQVSSGLENLFGMAHSDTNLLI
VIIVMSTVATIAAVSGVENGIRRLSNLNIVLFSGLLIFVLLFGPTLHLLNGFVQNIGDYL
NGVVLKTFDLYVYEADNAKSERWLGLWTLFYWAWWISWAPFVGMFIARISRGRTVRELVA
GVLLIPLGFTLAWLSIFGNSALDLVMNHGAVELGKTALEQPSMAIYQLLEHYPASKIVIG
VSIFVGFVLFLTPADSGAVMMANLSCKGGNVDEDAPHWLRIFWSVVITLVTIGLLLAGNF
EAMQTMVVLAGLPFSVVLVFFMFGLHKAMRQDVQIEQEQAELAARGRRGFSERLTQLDLQ
PSQSIVQRFMDKHVSPALEDAAAQLRTQGLDVQTLLGKAKRCMGVRIEMEEGNPFVYEVS
LDGYLAAPSESPNPDEARTRYYRAEVYLHNGSQEYDLMGFTQDQITRDVLDQFESHRQLL
GRVYS